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Academic Skills

Academic Skills is a curated collection of agent skills for research, science, engineering, analysis, finance, writing, and scientific communication.

This repository is prepared as a neutral fork of an open-source Agent Skills collection. It keeps the reusable skill content and removes upstream organization-specific promotion, install paths, and integration tracking.

What Is Included

This snapshot contains 139 skill directories under academic-skills/.

The collection covers:

• Bioinformatics, genomics, single-cell analysis, and multi-omics workflows
• Cheminformatics, drug discovery, molecular modeling, and protein engineering
• Scientific Python packages such as RDKit, Scanpy, scikit-learn, PyMC, NetworkX, Matplotlib, SymPy, Dask, Astropy, and many others
• Scientific databases and lookup workflows
• Geospatial science, remote sensing, materials science, physics, and astronomy
• Clinical research, treatment planning, regulatory writing, and medical imaging
• Literature review, peer review, scientific writing, posters, slides, diagrams, citation management, and document processing
• AI, machine learning, forecasting, reinforcement learning, and model interpretation workflows

Each skill usually includes a SKILL.md file plus optional examples, scripts, references, assets, or tests.

Getting Started

These instructions install the portable Agent Skills layer: each skill directory contains a SKILL.md file plus optional scripts/, references/, assets/, or tests/ content. Agent-specific features such as Claude Code hooks, subagent forks, dynamic shell injection, Codex plugin packaging, and OpenCode permission policy are intentionally out of scope for this repository.

Check Compatibility

Validate the repository before installing:

python scripts/validate_compat.py

Preview available skills without installing:

npx skills add crazymsn/academic-skills --list --full-depth

Claude Code

Install every skill for Claude Code into the current project:

npx skills add crazymsn/academic-skills --skill '*' --agent claude-code --copy -y --full-depth

Install globally for the current user:

npx skills add crazymsn/academic-skills --skill '*' --agent claude-code --global --copy -y --full-depth

Claude Code project installs use .claude/skills/; user installs use ~/.claude/skills/ unless CLAUDE_CONFIG_DIR points elsewhere.

Verify a project install:

python scripts/validate_compat.py --agent claude --scope project

Codex

Install every skill for Codex into the current project:

npx skills add crazymsn/academic-skills --skill '*' --agent codex --copy -y --full-depth