LQ

leonchaox/qinyan-academic-skills

Developer tools
656 stars 品質 73 トレンド 73

A curated, installable collection of AI agent skills for research, writing, analysis, and scientific workflows.

概要

A curated, installable collection of AI agent skills for research, writing, analysis, and scientific workflows.

README

Qinyan Academic Skills

A curated, installable collection of AI agent skills for research, writing, analysis, and scientific workflows.

English · 简体中文 · 繁體中文 · 日本語 · 한국어

Qinyan Academic Skills equips AI coding agents with reusable research capabilities: literature discovery, scientific writing, grant proposals, bioinformatics, drug discovery, clinical research, machine learning, data analysis, and more. The repository currently contains 182 skills across 18 domains, including five first-party Qinyan Academic skills.

Use the complete collection or install only the skill, category, tool, and scope that your workflow needs.


✨ Highlights

Capability What you get
Research coverage 182 skills spanning literature, writing, life sciences, AI, statistics, databases, and laboratory workflows
Agent portability One installer for Claude Code, Cursor, Codex, Gemini CLI, OpenClaw, and OpenCode
Selective installation Install the full library, one category, or one named skill
Project isolation Choose global installation or keep skills inside a single project
Lifecycle management Search, inspect status, check for updates, and update installed skills
Version-controlled source Every skill is plain text, reviewable, portable, and easy to customize

🚀 Quick start

Install everything

The default target is the global Claude Code skills directory.

curl -fsSL https://raw.githubusercontent.com/LeonChaoX/qinyan-academic-skills/main/install.sh | bash

[!NOTE] The installer requires Bash, Git, and curl. On Windows, run it in WSL or Git Bash. Review install.sh before piping it to Bash if your environment requires source inspection.

Install only what you need

INSTALLER="https://raw.githubusercontent.com/LeonChaoX/qinyan-academic-skills/main/install.sh"

# Install one category
curl -fsSL "$INSTALLER" | bash -s -- --category 01

# Install one skill
curl -fsSL "$INSTALLER" | bash -s -- --skill scanpy

# Install into the current project instead of globally
curl -fsSL "$INSTALLER" | bash -s -- --project --skill scientific-writing

# Target another supported agent
curl -fsSL "$INSTALLER" | bash -s -- --tool codex

Short forms such as -c, -s, and -t are also supported. Run bash install.sh --help for the complete command reference.

Discover and maintain skills

# Browse and search
bash install.sh --list
bash install.sh --list-skills
bash install.sh --search "protein"

# Inspect and update
bash install.sh --status
bash install.sh --check-update
bash install.sh --update
bash install.sh --update --skill scanpy

Clone the repository

git clone https://github.com/LeonChaoX/qinyan-academic-skills.git
cd qinyan-academic-skills
bash install.sh --help

🤖 Supported agents

Agent --tool value Global directory Project directory
Claude Code claude (default) ~/.claude/skills/ .claude/skills/
Cursor cursor ~/.cursor/skills/ .cursor/skills/
Codex codex ~/.codex/skills/ .codex/skills/
Gemini CLI gemini ~/.gemini/skills/ .gemini/skills/
OpenClaw openclaw ~/.openclaw/skills/ .openclaw/skills/
OpenCode opencode ~/.config/opencode/skills/ .opencode/skills/

🧭 Skill catalog

Each category links directly to its source directory. Use --list-skills for the complete list or --search to discover skills by name and description.

ID Category Skills Focus
Qinyan Academic skills 5 Paper search, analysis, polishing, citations, and topic analysis
01 Literature discovery and reference management 10 Scholarly search, reviews, citation workflows, and literature databases
02 Scientific writing and communication 6 Manuscripts, peer review, research proposals, and venue templates
03 Academic presentation and visualization 9 Slides, posters, schematics, infographics, and scientific figures
04 Research methods and scientific reasoning 10 Hypotheses, critical thinking, brainstorming, evaluation, and grants
05 Bioinformatics and genomics 21 Sequences, single-cell analysis, regulatory networks, and variants
06 Cheminformatics and drug discovery 12 Molecular processing, docking, medicinal chemistry, and simulation
07 Clinical medicine and precision health 18 Trials, clinical reports, imaging, variants, and decision support
08 Protein engineering and structural biology 7 Protein language models, structures, domains, and sequence resources
09 Machine learning and artificial intelligence 14 Deep learning, classical ML, forecasting, optimization, and explainability
10 Materials science and computational physics 10 Materials, quantum computing, astronomy, fluids, and simulation
11 Data analysis and statistical modeling 11 Dataframes, statistics, visualization, graphs, and symbolic mathematics
12 Scientific databases 22 Chemistry, genes, proteins, pathways, populations, and patents
13 Laboratory automation and integrations 9 ELNs, cloud labs, robotics, imaging, and workflow platforms
14 Documents and data tools 7 PDF, Word, PowerPoint, spreadsheets, notebooks, and conversion
15 Finance and economic data 6 Markets, filings, fiscal data, economic series, and research reports
16 Geospatial analysis and remote sensing 2 GIS, satellite imagery, spatial analysis, and remote sensing
17 Platforms and infrastructure 3 Resource discovery, cloud compute, and ISO 13485 readiness

First-party Qinyan Academic skills

Skill Purpose
qinyan-paper-search Search Google Scholar, PubMed, arXiv, and Wanfang through the Qinyan Academic OpenAPI
qinyan-paper-analysis Produce structured, in-depth analysis of individual academic papers
qinyan-paper-polish Improve Chinese and English academic prose while preserving meaning
qinyan-citation Discover sources and format citations in common academic styles
qinyan-topic-analysis Evaluate research topics, evidence landscapes, and promising directions

🔬 Research workflows

Goal Recommended starting points
Literature search and evidence mapping qinyan-paper-search, openalex-database, pubmed-database, literature-review
Manuscript drafting and revision scientific-writing, qinyan-paper-polish, venue-templates, peer-review
Grant and proposal development nsfc-proposal, nssfc-proposal, research-grants, research-proposal
Academic slides and posters paper-slide-deck, scientific-slides, latex-posters, pptx-posters
Bioinformatics and omics biopython, scanpy, pydeseq2, scvi-tools, gget
Drug discovery and molecular modeling rdkit, deepchem, diffdock, molecular-dynamics, rowan
Statistical analysis and visualization statistical-analysis, statsmodels, polars, plotly, seaborn
Clinical and precision medicine clinical-decision-support, clinicaltrials-database, clinvar-database, pydicom

[!TIP] Start with one focused skill, inspect its SKILL.md, and combine skills only when the research workflow genuinely needs multiple capabilities.


📖 Documentation

  • Technical guide — installer architecture, search, update detection, and version management
  • install.sh --help — complete CLI options and examples
  • skills/ — canonical source for every skill

🙏 Sources and attribution

This collection combines first-party Qinyan Academic skills with carefully organized skills derived from the following open-source projects:

  • K-Dense-AI/claude-scientific-skills — broad scientific research skill collection
  • luwill/research-skills — academic slides, literature reviews, and research planning workflows
  • Qinyan Academic — paper search, paper analysis, academic polishing, citation discovery, and topic analysis

Attribution and license metadata for an individual skill remain in that skill’s SKILL.md.


🤝 Contributing

Contributions that improve skills, translations, documentation, and installer compatibility are welcome.

  1. Fork the repository and create a focused branch from main
  2. Add or update a skill in the appropriate category, keeping SKILL.md as its entry point
  3. Update affected documentation and translations
  4. Validate links, commands, and formatting
  5. Open a pull request with a clear description of the change and its impact

When changing shared facts such as counts, supported tools, or CLI flags, update all five README files in the same pull request.


📄 License

The repository is distributed under the MIT License. Individual skills may declare additional or different terms in their SKILL.md; review those terms before redistribution or commercial use.

View this README on GitHub

推奨ツール

別のキーワードを試すか、フィルタを外してください。

インストール

npx skillfish add leonchaox/qinyan-academic-skills