databricks-industry-solutions/vital-skills
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Health & Life Sciences agent skills for Databricks Genie Code: genomics, RWE cohorts, PHI de-identification, payer/provider measures, and skill evaluation
概要
Each skill is a SKILL.md folder that teaches Genie Code following the Agent Skills standard) how to run domain workflows with libraries, tools and MCP servers. Site: https://databricks-industry-solutions.github.io/vital-skills/ Git clone this repo onto Databricks. Then open Genie Code and click on Customizations to add the cloned folder. It should point to the skills subfolder Run sync_skills_git2unity.py to sync the latest skills from the repo to Unity Catalog. They also show up on Unity Gateway under Skills. On Databricks, start Serverless or a cluster (>= 15.0 runtime) for compute. Then open the terminal (how-to-guide). It should already have the Databricks CLI installed. You can get the SQL warehouse id from the Databricks left menu bar: SQL Warehouses > select warehouse > Name. It should list the warehouse ID. More details here. Repo layout and skill templates are inspired by the patterns in SciAgent-Skills Licensed under the Databricks License. See LICENSE.md and NOTICE.
README
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Vital Skills
Agent skills for Health & Life Sciences workflows.
Each skill is a SKILL.md folder that teaches Genie Code following the Agent Skills standard) how to run domain workflows with libraries, tools and MCP servers.
Site: https://databricks-industry-solutions.github.io/vital-skills/
Setup
Git clone this repo to Databricks
Git clone this repo onto Databricks. Then open Genie Code and click on Customizations to add the cloned folder. It should point to the skills subfolder
Available Skills
| Skill | Category | What it does |
|---|---|---|
| bulk-rnaseq | Bioinformatics | Find top differentially expressed genes from bulk RNA-seq counts. |
| open-weight-models | Bioinformatics | Package, register, validate & deploy open-weight HLS models on Databricks, such as TEDDY and Geneformer. |
| pathway-enrichment-analysis | Bioinformatics | Pathway enrichment for RNA-seq (ORA or GSEA). |
| sc-rnaseq | Bioinformatics | Analyze single-cell RNA-seq data from .h5ad files. |
推奨ツール
別のキーワードを試すか、フィルタを外してください。
インストール
npx skillfish add databricks-industry-solutions/vital-skills