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u9401066/pubmed-search-mcp

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MCP SDK v2 server for PubMed and multi-source biomedical research, with resilient search, full text, citations, and tenant-safe deployment.

概要

A Domain-Driven Design (DDD) based MCP server that serves as an intelligent research assistant for AI agents, providing task-oriented literature search and analysis capabilities. - 🔧 - Streamlined PubMed, Europe PMC, CORE, NCBI database access, and the versioned - 🛡️ - Deploy once and serve many agents: per-tenant sessions, caches, and artifacts, bearer-token auth, and per-tenant fair-share limits. See DEPLOYMENT.md - 🖼️ - Pull figure captions, direct image URLs, and PDF links from PMC Open Access articles - 📘 - Browse the complete language-switchable handbook: user workflows, architecture, 41-tool reference, pipeline tutorials, source/broker contracts, integrations and operations, security, and deployment at u9401066.github.io/pubmed-search-mcp - 📖 - GitHub-native mirror of the same canonical documentation at github.

README

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PubMed Search MCP

Professional Literature Research Assistant for AI Agents - More than just an API wrapper

A Domain-Driven Design (DDD) based MCP server that serves as an intelligent research assistant for AI agents, providing task-oriented literature search and analysis capabilities.

✨ What’s Included:

  • 🔧 41 MCP Tools - Streamlined PubMed, Europe PMC, CORE, NCBI database access, and the versioned Research Chronicle
  • 🛡️ Multi-Agent Service Mode - Deploy once and serve many agents: per-tenant sessions, caches, and artifacts, bearer-token auth, and per-tenant fair-share limits. See DEPLOYMENT.md
  • 🖼️ OA Figure Extraction - Pull figure captions, direct image URLs, and PDF links from PMC Open Access articles
  • 📘 Docs Site - Browse the complete language-switchable handbook: user workflows, architecture, 41-tool reference, pipeline tutorials, source/broker contracts, integrations and operations, security, and deployment at u9401066.github.io/pubmed-search-mcp
  • 📖 GitHub Wiki - GitHub-native mirror of the same canonical documentation at github.com/u9401066/pubmed-search-mcp/wiki
  • 📚 26 Claude Skills - Ready-to-use workflow guides for AI agents (Claude Code-specific)
  • 📖 Copilot Instructions - VS Code GitHub Copilot integration guide
  • Research automation - Scheduled pipeline diffs/local notifications, Chronicle rebuild summaries, multi-seed citation snowballing, and opt-in session deduplication with options="exclude_seen".

🌐 Language: English | 繁體中文

GitHub で README 全文を見る

インストール

uvx pubmed-search-mcp
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設定

{ "mcpServers": { "pubmed-search": { "command": "uvx", "args": ["pubmed-search-mcp"], "env": { "NCBI_EMAIL": "[email protected]" } } } }