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sage-bionetworks/agent-skills
Developer tools5 stars Quality 52 Trend 21Apache-2.0
This repository contains agent skills that are leveraged across Sage Bionetworks
Overview
A collection of agent skills for Sage Bionetworks — data science, bioinformatics, and research tooling for use with Claude Code. Want to add a skill? See CONTRIBUTING.md.
README
Agent Skills
A collection of agent skills for Sage Bionetworks — data science, bioinformatics, and research tooling for use with Claude Code.
Install
/plugin marketplace add Sage-Bionetworks/agent-skills
/plugin install agent-skills
Available Skills
| Skill | Description | Category |
|---|---|---|
| synapse-python-client | Interact with Synapse (synapse.org) for biomedical data sharing using the modern Python client | Bioinformatics |
| nih-reporter | Query the NIH RePORTER API (projects + publications) — payload construction, pagination, rate-limit handling, and the criteria↔include↔response field-name mapping | Research |
| synapse-data-curation | Advanced Synapse REST API patterns for data curation: annotations2 etag handling, Dataset entity creation with dynamic columns, JSON Schema binding, and wiki management | Bioinformatics |
| scientific-metadata-extraction | Extract and normalize scientific dataset metadata from GEO, SRA/ENA, PubMed, and BioSample: per-sample ID derivation, author normalization, assay type determination, and a 4-tier gap-fill strategy | Bioinformatics |
| bootstrap-claudemd | Generate a new CLAUDE.md from scratch by exploring a codebase | Developer Tools |
| evolve-claudemd | Update existing CLAUDE.md files by analyzing code changes and auditing accuracy | Developer Tools |
| pull-request-description | Draft PR titles and descriptions that follow the repo’s pull request template and pull context from the branch’s Jira ticket, scaled to the size of the change | Developer Tools |
Contributing
Want to add a skill? See CONTRIBUTING.md.
Recommended Tools
Try a different keyword or remove a filter.
Install
npx skillfish add sage-bionetworks/agent-skills