MCP Server Manager for Claude 🎛️

A powerful CLI tool to manage MCP (Model Context Protocol) servers across Claude Desktop and Claude Code. Enable, disable, and manage your MCP servers without losing configuration!

🌟 Features

• 🔍 Auto-detects Claude Desktop and Claude Code installations
• 🎯 Manages servers across all configuration levels (Desktop, User, Project, Local)
• 🎨 Color-coded display - Different colors for different configuration sources
• 💾 Preserves configurations when disabling servers
• 🔄 Interactive mode for easy management
• 📁 Works in any project directory after global installation
• 🔐 Automatic backups before making changes

📸 Screenshots

List View

Shows all MCP servers with their status and configuration source

Interactive Mode

Toggle multiple servers easily with interactive selection

Detailed View

Detailed configuration information for each server

🚀 Quick Start

1. Clone the Repository

git clone https://github.com/yourusername/mcp-server-manager.git
cd mcp-server-manager

2. Install Globally (Recommended)

# Automatic installation
chmod +x install.sh
./install.sh

# OR Manual installation
sudo cp mcp_manager.py /usr/local/bin/mcp-manager
sudo chmod +x /usr/local/bin/mcp-manager
sudo ln -s /usr/local/bin/mcp-manager /usr/local/bin/mcp

3. Use from Any Project!

cd /any/project/directory
mcp list  # See all MCP servers for this context

🎮 Usage

Basic Commands

# List all MCP servers
mcp list

# Detailed view with configuration info
mcp list -d

# Interactive mode (easiest way to manage servers)
mcp interactive

# Toggle a specific server
mcp toggle github

# Get help
mcp --help

Managing Servers by Application

# Manage only Claude Desktop servers
mcp --app desktop list
mcp --app desktop interactive

# Manage only Claude Code servers
mcp --app code list
mcp --app code interactive

# Auto-detect (default)
mcp list

🎯 Interactive Mode

The interactive mode is the easiest way to manage your servers:

mcp interactive

You’ll see:

Interactive MCP Server Manager
Select servers to toggle (space-separated numbers, 'q' to quit, 'a' to apply changes):

  1. [ON ] [D] brave-search
  2. [ON ] [D] github
  3. [OFF] [D] puppeteer
  4. [ON ] [L] sequential-thinking
  5. [ON ] [P] project-specific-server

Levels: [D]esktop, [L]ocal, [P]roject, [U]ser/Global

Enter selection (numbers/q/a): 1 3 4

• Enter numbers separated by spaces to toggle servers
• Press a to apply and save changes
• Press q to quit

📊 Understanding Configuration Levels

MCP servers can be configured at different levels, with different priorities:

Claude Desktop

• Location: ~/Library/Application Support/Claude/claude_desktop_config.json (macOS)
• Indicator: [D] in purple
• Scope: Available in Claude Desktop app

Claude Code Levels (Priority Order)

1. Local [L] - Project-specific in ~/.claude.json
2. Project [P] - .mcp.json or .claude/settings.json in project
3. User/Global [U] - ~/.claude.json global section

Higher priority levels override lower ones.

🔍 Finding MCP Server Sources

Use the included detector to find WHERE servers come from:

cd /your/project
python3 ~/path/to/mcp-server-manager/claude_mcp_detector.py

This shows:

• All configuration files
• Which servers are in each file
• Which servers are actually ACTIVE
• The priority order

💡 Common Use Cases

Disable Unused Servers in a Project

cd ~/Projects/MyProject
mcp interactive
# Select servers to disable
# Press 'a' to apply

Check What Claude Code Sees

# In your project directory
claude mcp list  # What Claude Code actually uses
mcp list         # What our tool detects

Clean Up Duplicate Servers

If you have the same server in both Desktop and Code:

mcp interactive
# Disable the duplicate you don't need

Project-Specific Configuration

cd ~/Projects/MyProject
# Add a project-specific server
claude mcp add github --scope local
# Now manage it with
mcp interactive

🛠️ Advanced Features

Backup Management

Every change creates a timestamped backup:

~/.claude.json.backup.20250110_143022

Disabled Server Storage

Disabled servers are stored in _disabled_mcpServers sections, preserving their configuration:

{
  "mcpServers": {
    "active-server": { ... }
  },
  "_disabled_mcpServers": {
    "disabled-server": { ... }
  }
}

Direct Config Editing

The tool modifies your config files directly, so you can also:

1. Use mcp list to see current state
2. Edit the JSON files manually if needed
3. Use mcp list to verify changes

🐛 Troubleshooting

“No MCP servers found”

• Check if Claude Desktop or Claude Code is installed
• Run mcp list -d to see which config files are being checked
• Ensure config files exist and are valid JSON

Changes not taking effect

• Claude Desktop: Restart the app
• Claude Code: Restart with claude command in your project

Permission denied

# Use sudo for system directories
sudo cp mcp_manager.py /usr/local/bin/mcp-manager

# Or install in user directory
mkdir -p ~/.local/bin
cp mcp_manager.py ~/.local/bin/mcp-manager
export PATH="$PATH:~/.local/bin"

Different servers in Claude Code vs tool

• Claude Code merges configurations from multiple sources
• Use claude_mcp_detector.py to see all sources
• Higher priority configs override lower ones

📁 Configuration File Locations

Claude Desktop

• macOS: ~/Library/Application Support/Claude/claude_desktop_config.json
• Windows: %APPDATA%\Claude\claude_desktop_config.json
• Linux: ~/.config/Claude/claude_desktop_config.json

Claude Code

• User/Global: ~/.claude.json
• User Settings: ~/.claude/settings.json
• Project: .mcp.json or .claude/settings.json
• Project Local: .claude/settings.local.json

🤝 Contributing

Contributions are welcome! Please feel free to submit a Pull Request.

1. Fork the repository
2. Create your feature branch (git checkout -b feature/AmazingFeature)
3. Commit your changes (git commit -m 'Add some AmazingFeature')
4. Push to the branch (git push origin feature/AmazingFeature)
5. Open a Pull Request

📜 License

This project is licensed under the MIT License - see the LICENSE file for details.

🙏 Acknowledgments

• Built for the Claude Desktop and Claude Code community
• Inspired by the need for better MCP server management
• Thanks to Anthropic for Claude and the MCP protocol

🆕 What’s New

v2.0.0 (Latest)

• ✨ Added Claude Desktop support
• ✨ Auto-detection of Claude Desktop vs Claude Code
• ✨ Multi-level configuration support
• ✨ Global installation script
• ✨ MCP detector tool to find server sources
• 🐛 Fixed macOS compatibility issues

v1.0.0

• Initial release with Claude Code support

📝 Future Features

• [ ] Server groups/profiles
• [ ] Import/export configurations
• [ ] Server health checks
• [ ] GUI version
• [ ] Sync between Desktop and Code
• [ ] Server templates

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Made with ❤️ for Claude users everywhere

If you find this tool helpful, please ⭐ star the repository!