集成多个生物和医学数据库用于研究的MCP服务器。

快速启动

连接到生产服务器

使用该MCP服务器最简单的方式是连接到生产部署。所有API均为 通过统一端点提供，让你能在同一个地方访问所有工具。

生产网址： https://mcp.cloud.curiloo.com/tools/unified/mcp

在光标（或其他MCP客户端）中配置

将此添加到您的.cursor/mcp.json（或等效MCP客户端配置）：

你得到了什么

一旦连接，您将能够访问14个生物和医疗API中的100+工具：

• 通路：Reactome、KEGG、Pathway Commons
• 基因与蛋白质：UniProt、MyGene.info、节点正一化
• 目标与协会：OpenTargets平台
• 变体：MyVariant.info，GWAS目录
• 疾病：OMIM，MyDisease.info
• 药物：ChEMBL、MyChem.info、OpenFDA
• 文献：PubMed/PubTator3
• 试验：ClinicalTrials.gov，NCI临床试验
• 知识图谱：每个治愈矩阵知识图谱

例子：寻找基因

单个API端点

Biological APIs MCP Server

MCP server that integrates multiple biological and medical databases for research purposes.

Quick Start

Connect to Production Server

The easiest way to use this MCP server is to connect to the production deployment. All APIs are available through a unified endpoint that gives you access to all tools in one place.

Production URL: https://mcp.cloud.curiloo.com/tools/unified/mcp

Configure in Cursor (or other MCP client)

Add this to your .cursor/mcp.json (or equivalent MCP client configuration):

{
    "mcpServers": {
        "medical-apis": {
            "url": "https://mcp.cloud.curiloo.com/tools/unified/mcp"
        }
    }
}

What You Get

Once connected, you’ll have access to 100+ tools across 14 biological and medical APIs:

• Pathways: Reactome, KEGG, Pathway Commons
• Genes & Proteins: UniProt, MyGene.info, Node Normalization
• Targets & Associations: OpenTargets Platform
• Variants: MyVariant.info, GWAS Catalog
• Diseases: OMIM, MyDisease.info
• Drugs: ChEMBL, MyChem.info, OpenFDA
• Literature: PubMed/PubTator3
• Trials: ClinicalTrials.gov, NCI Clinical Trials
• Knowledge Graphs: Every Cure Matrix Knowledge Graph

Example: Search for a Gene

{
    "jsonrpc": "2.0",
    "method": "tools/call",
    "params": {
        "name": "mygene_get_gene",
        "arguments": {
            "gene_id_or_symbol": "TP53"
        }
    }
}

Individual API Endpoints

If you prefer to use individual APIs separately, each API has its own endpoint:

• /tools/reactome/mcp - Reactome only
• /tools/pubmed/mcp - PubMed only
• /tools/chembl/mcp - ChEMBL only
• … (see Available Endpoints for full list)

Local Development

To run your own instance locally, you can either:

• Use Docker Compose (recommended for quick setup) - see Docker Compose Setup
• Run directly with Python/uv - see Running the Server below

APIs Integrated

✅ Implemented APIs

• Reactome API - Pathway information, gene/protein queries, disease associations
• KEGG API - Pathway maps, gene annotations, disease and drug information
• UniProt API - Protein sequences, functional annotations, disease associations
• OMIM API - Genetic disease information, gene-disease associations (requires API key)