broadinstitute/fiss-mcp

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Repository Install

MCP server for Terra

概览

A Model Context Protocol (MCP) server that enables Claude and Claude Code to interact with Terra.Bio workspaces via the FISS (Firecloud) API. This MCP server provides 21 tools for interacting with Terra.Bio workspaces: These tools are available in both read-only mode (default) and when write access is enabled: - - List Terra workspaces accessible to the authenticated user, filtered by name_contains / namespace and capped by limit (default 100) - - Get workspace metadata and attributes for dashboard documentation (description, bucket, Google project, access level, authorization domain, timestamps) - - List data tables (entity types) in a workspace with row counts and column names - - Read rows from a Terra data table: entity_name for an exact single-row lookup, or a page with column selection (columns), paging (page, page_size) and text filtering (filter_terms), under a response-size guard (max_response_bytes) that refuses an oversized page instead of returning it - - List all...

README

以下为原文 README 节选，完整内容请查看原文。

Terra.Bio MCP Server

A Model Context Protocol (MCP) server that enables Claude and Claude Code to interact with Terra.Bio workspaces via the FISS (Firecloud) API.

Available Tools
- Read-Only Tools (Always Available)
- Write-Access Tools (Require --allow-writes Flag)
Skills (Procedural Workflows)
Use Cases
- Example Usage
Data Privacy and Security Considerations
Installation
- Pointing at a different Terra deployment
Usage
Claude Science Integration
- GCS inside Claude Science
Testing
Development
- Project Structure
- Adding New Tools
Future Enhancements
Architecture
Troubleshooting
Contributing
License
Resources

Available Tools

This MCP server provides 21 tools for interacting with Terra.Bio workspaces:

Read-Only Tools (Always Available)

These tools are available in both read-only mode (default) and when write access is enabled:

Workspace & Data Discovery

list_workspaces - List Terra workspaces accessible to the authenticated user, filtered by name_contains / namespace and capped by limit (default 100)
get_workspace_metadata - Get workspace metadata and attributes for dashboard documentation (description, bucket, Google project, access level, authorization domain, timestamps)
get_workspace_data_tables - List data tables (entity types) in a workspace with row counts and column names

在 GitHub 查看完整 README

安装

This server does not publish a one-line install command.

Open the repository installation guide 新手？先看 mcpskill.org 教程 →

配置

{
  "mcpServers": {
    "terra": {
      "command": "python3",
      "args": ["/absolute/path/to/fiss-mcp/src/terra_mcp/server.py"]
    }
  }
}