plant-phenomics-lab/brapi-mcp

Developer tools

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5 stars 4 forks 품질 76 트렌드 33MIT

Repository Install

Jerry Yu, Akarsh Eathamukkala, Jay Shah, Benjamin Maza, Jerome Maleski

개요

Jerry Yu, Akarsh Eathamukkala, Jay Shah, Benjamin Maza, Jerome Maleski This server provides 10 powerful tools for accessing and analyzing plant breeding data from BrAPI-compatible servers: You can access some example workflows in the Examples folder. Conversational_Workflow.md and Covington_MetaAnalysis_EDA.md show some workflows that incorporate some complex interactive filtering. VS Code Copilot with Claude Sonnet/Haiku 4.5 were used to for the workflows. Download data from most BrAPI compatible servers. Generally use it to fetch data for subsequent searches. - "Where are all the locations that sweetpotatoes have been trialed on?" - "For the variantset with the dbID =5, what were the possible genotype calls?" Search and discover breeding data using advanced filters. Supports all search terms compatible with BrAPI. - "Find all studies in 'Mozambique' with 'Advanced Yield Trial' type.

README

원문 README의 일부입니다. 원문 보기.

Jerry Yu, Akarsh Eathamukkala, Jay Shah, Benjamin Maza, Jerome Maleski

🛠️ Tools Overview

This server provides 10 powerful tools for accessing and analyzing plant breeding data from BrAPI-compatible servers:

Tool Name	Description
Core BrAPI Access
`describe_server_capabilities`	Returns a list of accesible endpoints and searchable filters for the BrAPI compliant server you are connected to.
`brapi_get`	Fetches data from any BrAPI GET endpoint. Supports filtering by Database ID (DbID) and pagination.
`brapi_search`	Performs advanced searches using BrAPI POST search endpoints.
`get_search_parameters`	Gets valid search parameters for a specific service. Use before `brapi_search` to see available filters.
`get_image_search_parameters`	Retrieves valid filters for the image search endpoint.
`download_images`	Downloads images from the BrAPI server to the local directory based on search criteria.
Data Processing & Management (Mostly for the Model)
`get_result_summary`	Provides a summary of a saved result (columns, row count, size) without loading the full data.
`load_result`	Loads a saved result (or a specific subset) into the conversation context for analysis. Supports pagination and column selection.
`get_download_instructions`	Generates URLs and instructions for downloading a csv of saved results via HTTP.
`quick_download_link`	Returns a direct download URL for a saved result, ideal for quick access.

You can access some example workflows in the Examples folder. Conversational_Workflow.md and Covington_MetaAnalysis_EDA.md show some workflows that incorporate some complex interactive filtering. VS Code Copilot with Claude Sonnet/Haiku 4.5 were used to for the workflows.

Examples

`brapi_get`

Download data from most BrAPI compatible servers. Generally use it to fetch data for subsequent searches.

Example Use Cases:

“Where are all the locations that sweetpotatoes have been trialed on?”

GitHub에서 전체 README 보기

설치

This server does not publish a one-line install command.

Open the repository installation guide MCP 초보자라면? mcpskill.org 가이드부터 시작하세요 →

설정

{
  "mcpServers": {
    "brapiserver": {
      "command": "uv",
      "args": [
        "run",
        "--directory",
        "/path/to/Breedbase-Client",
        "src/main.py"
      ]
    }
  }
}